Links



Useful links






Webservers / webtools

Some of the programs included in iTaxoTools have been implemented on the websites of other institutitions. Especially, the Paris museum (MNHN) offers web implementations of ABGD, ASAP and LIMES. Especially the ASAP webtool offers a series of interactive options not available in the iTaxoTools version:

ABGD webtool
ASAP webtool
MolD preliminary webtool

LIMES website

The Exelixis lab headed by Alexandros Stamatakis at the Heidelberg Institute for Theoretical Studies offers a web implementation of PTP, as well as additional resources to use this program:

PTP webtool


Websites / tutorials

Detailed information and a tutorial to run DELINEATE can be found on the website of Jeet Sukumaran:

DELINEATE website

and useful information on tr2 is found on the website of Tomochika Fujisawa:

TR2 website


Projects and PIs

iTaxoTools started in the framework of the Taxon-Omics priority program of the DFG:

Taxon-Omics

Additional aspects on the archiving of taxonomic data packages will be developed together with the German Federation of Biological Data:

GFBio

Who we are: A collection of personal websites of some iTaxoTools collaborators:

Miguel Vences

Aurelien Miralles

Mark D. Scherz

Nicolas Puillandre

Susanne S. Renner


Code repositories

All code of iTaxoTools is open source and available from dedicated GitHub repositories. The main link to the entire project is the following:

iTaxoTools GitHub

The latest releases of executables and manual can be downloaded from this present website, but also from the following GitHub repository:

iTaxoTools executables

A full list of the repositories of all single tools is given in the following table:

Tool

Github repository (original / modified)



dnaconvert

https://github.com/iTaxoTools/DNAconvert

latlonconverter

https://github.com/iTaxoTools/latlon-converter

fastmerge

https://github.com/iTaxoTools/fastsplit-merge

fastsplit

https://github.com/iTaxoTools/fastsplit-merge

specimentablepruner

https://github.com/iTaxoTools/specimentablepruner

specimentablemerger

https://github.com/iTaxoTools/specimentablemerger

linebreaker

https://github.com/iTaxoTools/linebreaker

simplestatscalculator

https://github.com/iTaxoTools/simple_stat

unitconverter

https://github.com/iTaxoTools/UnitConverter

spartmapper

https://github.com/iTaxoTools/Spartmapper

nodenamecorrector

https://github.com/iTaxoTools/nodenamecorrector

pyr8s

https://github.com/iTaxoTools/pyr8s

TaxI2

https://github.com/iTaxoTools/TaxI2

morphometricanalyzer

https://github.com/iTaxoTools/morphometricanalyzer

dnadiagnoser

https://github.com/iTaxoTools/dnadiagnoser

PTP

https://github.com/zhangjiajie/PTP

https://github.com/iTaxoTools/PTP-pyqt5

GMYC

https://github.com/zhangjiajie/pGMYC

https://github.com/iTaxoTools/GMYC-pyqt5

tr2

https://github.com/tfujisawa/tr2-delimitation-git

https://github.com/iTaxoTools/pyqt5-tr2

DELINEATE

https://github.com/jeetsukumaran/delineate

https://github.com/iTaxoTools/pyqt5-delineate

ABGD

https://bioinfo.mnhn.fr/abi/public/abgd/

https://github.com/iTaxoTools/ABGDpy

ASAP

https://bioinfo.mnhn.fr/abi/public/asap/

https://github.com/iTaxoTools/ASAPy

LIMES 2.0

https://github.com/iTaxoTools/LIMES

MolD

https://github.com/SashaFedosov/MolD

https://github.com/iTaxoTools/MolD_pyqt5